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  5. GRMZM2G128176

GRMZM2G128176


Description : DNA binding;zinc ion binding;DNA binding


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G128176
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
441144 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Bradi1g18770 No alias DNA binding;zinc ion binding;DNA binding 0.05 Orthogroups_2024-Update
Bradi4g26627 No alias PHD finger family protein 0.03 Orthogroups_2024-Update
Bradi4g42780 No alias PHD finger family protein 0.02 Orthogroups_2024-Update
Brara.B00457.1 No alias PHD finger transcription factor & component *(DDP) of... 0.02 Orthogroups_2024-Update
Glyma.11G095800 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Glyma.12G021900 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Glyma.12G084300 No alias PHD finger family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G022310.4 No alias PHD finger transcription factor & component *(DDP) of... 0.03 Orthogroups_2024-Update
MA_10689g0010 No alias (at5g35210 : 257.0) metalloendopeptidases;zinc ion... 0.03 Orthogroups_2024-Update
PSME_00009679-RA No alias (at5g12400 : 514.0) DNA binding;zinc ion binding;DNA... 0.03 Orthogroups_2024-Update
Seita.2G420800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.04 Orthogroups_2024-Update
Sobic.002G405800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.04 Orthogroups_2024-Update
Sobic.005G034700.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 424 466
IPR018501 DDT_dom 231 283
No external refs found!