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  5. GRMZM2G143788

GRMZM2G143788


Description : SWIB/MDM2 domain superfamily protein


Gene families : OG_42_0000976 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000976_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G143788
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Bradi4g06670 No alias SWIB/MDM2 domain superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G243300 No alias SWIB/MDM2 domain superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G001000 No alias SWIB/MDM2 domain superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G028290.3 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
Potri.009G092200 No alias SWIB/MDM2 domain superfamily protein 0.05 Orthogroups_2024-Update
Seita.1G099300.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.02 Orthogroups_2024-Update
Seita.3G355300.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.03 Orthogroups_2024-Update
Sobic.004G028400.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.04 Orthogroups_2024-Update
Sobic.008G107800.1 No alias component *(SWIB) of SWI-B chromatin-remodeling complexes 0.08 Orthogroups_2024-Update
Solyc01g107330 No alias SWIB_MDM2 domain protein 0.03 Orthogroups_2024-Update
evm.model.contig_2386.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 69 141
No external refs found!