At1g34310

Description : Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At1g34310
Cluster	HCCA clusters: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
At1g34410	No alias	Putative auxin response factor 21...	0.04	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Brara.B03784.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F01355.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
LOC_Os04g57610	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Potri.011G091900	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0004521	endoribonuclease activity	IEP	Predicted GO
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Predicted GO
MF	GO:0005199	structural constituent of cell wall	IEP	Predicted GO
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0009664	plant-type cell wall organization	IEP	Predicted GO
MF	GO:0009916	alternative oxidase activity	IEP	Predicted GO
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predicted GO
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
BP	GO:0019321	pentose metabolic process	IEP	Predicted GO
BP	GO:0019566	arabinose metabolic process	IEP	Predicted GO
CC	GO:0031012	extracellular matrix	IEP	Predicted GO
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predicted GO
BP	GO:0042546	cell wall biogenesis	IEP	Predicted GO
CC	GO:0044421	extracellular region part	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
BP	GO:0046373	L-arabinose metabolic process	IEP	Predicted GO
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predicted GO
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	252	330
IPR033389	AUX/IAA_dom	556	591
IPR033389	AUX/IAA_dom	503	547
IPR003340	B3_DNA-bd	126	227

External Links

No external refs found!

At1g34310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation