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At1g35730


Description : pumilio 9 [Source:TAIR;Acc:AT1G35730]


Gene families : OG_42_0001160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g35730
Cluster HCCA clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_25869 No alias pumilio-like 12 0.03 Orthogroups_2024-Update
Cre12.g544700 No alias pumilio 12 0.02 Orthogroups_2024-Update
Glyma.04G102900 No alias pumilio 7 0.02 Orthogroups_2024-Update
Glyma.06G104100 No alias pumilio 7 0.02 Orthogroups_2024-Update
Glyma.13G088600 No alias pumilio 7 0.03 Orthogroups_2024-Update
LOC_Os12g31000 No alias pumilio-family RNA binding repeat domain containing... 0.03 Orthogroups_2024-Update
Mp1g09040.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Potri.002G095400 No alias pumilio 7 0.03 Orthogroups_2024-Update
Sobic.008G100300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.tig00020878.26 No alias (at5g56510 : 284.0) Encodes a member of the Arabidopsis... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 286 318
IPR001313 Pumilio_RNA-bd_rpt 332 354
IPR001313 Pumilio_RNA-bd_rpt 362 395
IPR001313 Pumilio_RNA-bd_rpt 507 530
IPR001313 Pumilio_RNA-bd_rpt 437 456
No external refs found!