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  5. GRMZM2G153275

GRMZM2G153275


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G153275
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
At5g52630 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E01438.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G173900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G148000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g40020 No alias selenium binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10164206g0010 No alias (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_18165g0010 No alias (at3g12770 : 580.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00006159-RA No alias (at3g46790 : 260.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00026765-RA No alias (at4g18750 : 678.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.014G029500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G126600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen02g018640 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.03 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 786 909
IPR002885 Pentatricopeptide_repeat 511 560
IPR002885 Pentatricopeptide_repeat 310 356
IPR002885 Pentatricopeptide_repeat 209 256
IPR002885 Pentatricopeptide_repeat 613 659
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 386 411
IPR002885 Pentatricopeptide_repeat 110 136
IPR002885 Pentatricopeptide_repeat 285 304
IPR002885 Pentatricopeptide_repeat 413 443
IPR002885 Pentatricopeptide_repeat 484 510
IPR002885 Pentatricopeptide_repeat 587 610
No external refs found!