Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Zea release: GRMZM2G153275 | |
Cluster | HCCA clusters: Cluster_65 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g52630 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
Bradi1g36900 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g42710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g36470 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi4g30190 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
Brara.A00474.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.E01438.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Glyma.01G228000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G173900 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.10G148000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os08g40020 | No alias | selenium binding protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10164206g0010 | No alias | (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_18165g0010 | No alias | (at3g12770 : 580.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00006159-RA | No alias | (at3g46790 : 260.0) Encodes a member of a PCMP (plant... | 0.02 | Orthogroups_2024-Update | |
PSME_00026765-RA | No alias | (at4g18750 : 678.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.014G029500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.3G126600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G114300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sopen00g008750 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen02g018640 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen07g003070 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00001038.5 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
MF | GO:0004018 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | IEP | Predicted GO |
BP | GO:0006188 | IMP biosynthetic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
MF | GO:0016842 | amidine-lyase activity | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
BP | GO:0046040 | IMP metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 786 | 909 |
IPR002885 | Pentatricopeptide_repeat | 511 | 560 |
IPR002885 | Pentatricopeptide_repeat | 310 | 356 |
IPR002885 | Pentatricopeptide_repeat | 209 | 256 |
IPR002885 | Pentatricopeptide_repeat | 613 | 659 |
IPR002885 | Pentatricopeptide_repeat | 82 | 107 |
IPR002885 | Pentatricopeptide_repeat | 386 | 411 |
IPR002885 | Pentatricopeptide_repeat | 110 | 136 |
IPR002885 | Pentatricopeptide_repeat | 285 | 304 |
IPR002885 | Pentatricopeptide_repeat | 413 | 443 |
IPR002885 | Pentatricopeptide_repeat | 484 | 510 |
IPR002885 | Pentatricopeptide_repeat | 587 | 610 |
No external refs found! |