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GRMZM2G156099


Description : C2H2 zinc-finger protein SERRATE (SE)


Gene families : OG_42_0002325 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G156099
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G227300 No alias C2H2 zinc-finger protein SERRATE (SE) 0.03 Orthogroups_2024-Update
HORVU7Hr1G097860.2 No alias component *(SERRATE) of DCL1-HYL1 miRNA biogenesis complex 0.03 Orthogroups_2024-Update
evm.model.contig_527.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007042 SERRATE/Ars2_C 417 603
IPR021933 SERRATE/Ars2_N 182 263
No external refs found!