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  5. GRMZM2G158034

GRMZM2G158034


Description : ribosomal protein S13A


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G158034
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
440805 No alias ribosomal protein S13A 0.04 Orthogroups_2024-Update
A4A49_64599 No alias 40s ribosomal protein s13 0.11 Orthogroups_2024-Update
At3g60770 No alias 40S ribosomal protein S13-1... 0.02 Orthogroups_2024-Update
Bradi3g13800 No alias ribosomal protein S13A 0.07 Orthogroups_2024-Update
Bradi3g13810 No alias ribosomal protein S13A 0.19 Orthogroups_2024-Update
Brara.D02734.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.E00496.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.G01898.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Brara.I04191.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Cre07.g331900 No alias ribosomal protein S13A 0.09 Orthogroups_2024-Update
Glyma.05G052300 No alias ribosomal protein S13A 0.16 Orthogroups_2024-Update
Glyma.05G052600 No alias ribosomal protein S13A 0.16 Orthogroups_2024-Update
HORVU7Hr1G075250.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Kfl00229_0020 kfl00229_0020_v1.1 (p62302|rs13_soybn : 266.0) 40S ribosomal protein S13 -... 0.08 Orthogroups_2024-Update
MA_141232g0010 No alias (p62302|rs13_soybn : 291.0) 40S ribosomal protein S13 -... 0.06 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.08 Orthogroups_2024-Update
PSME_00021950-RA No alias (p62302|rs13_soybn : 223.0) 40S ribosomal protein S13 -... 0.02 Orthogroups_2024-Update
Potri.002G146800 No alias Ribosomal protein S13/S15 0.04 Orthogroups_2024-Update
Potri.014G068600 No alias Ribosomal protein S13/S15 0.03 Orthogroups_2024-Update
Pp1s39_130V6 No alias 40s ribosomal protein s13 0.21 Orthogroups_2024-Update
Pp1s97_272V6 No alias 40s ribosomal protein s13 0.08 Orthogroups_2024-Update
Seita.6G084900.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.002G348100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.007G019000.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.007G019400.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Solyc01g091220 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.03 Orthogroups_2024-Update
Solyc03g083530 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.03 Orthogroups_2024-Update
Solyc05g051000 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.06 Orthogroups_2024-Update
Solyc10g018250 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.06 Orthogroups_2024-Update
Solyc11g072260 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.09 Orthogroups_2024-Update
Sopen01g036970 No alias Ribosomal S13/S15 N-terminal domain 0.07 Orthogroups_2024-Update
Sopen03g023340 No alias Ribosomal S13/S15 N-terminal domain 0.06 Orthogroups_2024-Update
Sopen05g029470 No alias Ribosomal S13/S15 N-terminal domain 0.16 Orthogroups_2024-Update
Sopen10g007480 No alias Ribosomal S13/S15 N-terminal domain 0.02 Orthogroups_2024-Update
Sopen11g029930 No alias Ribosomal S13/S15 N-terminal domain 0.06 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.2 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 74 146
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!