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GRMZM2G158835


Description : chloroplast RNA-binding protein 29


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G158835
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.03 Orthogroups_2024-Update
Bradi1g61250 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.I03035.1 No alias plastidial ribonucleoprotein *(CP29) 0.03 Orthogroups_2024-Update
Glyma.10G058500 No alias chloroplast RNA-binding protein 29 0.04 Orthogroups_2024-Update
Glyma.13G145200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G048440.1 No alias plastidial ribonucleoprotein *(CP29) 0.05 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Seita.9G388600.1 No alias plastidial ribonucleoprotein *(CP29) 0.02 Orthogroups_2024-Update
Sobic.001G357200.1 No alias plastidial ribonucleoprotein *(CP29) 0.04 Orthogroups_2024-Update
Sopen10g035530 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 79 149
IPR000504 RRM_dom 185 255
No external refs found!