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GRMZM2G158884


Description : RNA-binding KH domain-containing protein


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G158884
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
73985 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
LOC_Os03g25970 No alias KH domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_6622g0010 No alias (at5g46190 : 163.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Orthogroups_2024-Update
PSME_00037484-RA No alias (at5g53060 : 276.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
Seita.2G260600.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 337 402
IPR004088 KH_dom_type_1 252 302
IPR004088 KH_dom_type_1 551 604
IPR004088 KH_dom_type_1 112 177
No external refs found!