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GRMZM2G160626


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G160626
Cluster HCCA clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
At1g78400 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At3g07840 No alias Pectin lyase-like superfamily protein... 0.02 Orthogroups_2024-Update
Glyma.04G157600 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.14G006100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g10300 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
Seita.4G218200.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.4G218300.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.5G182200.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.9G141800.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 68 397
No external refs found!