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  5. GRMZM2G160996

GRMZM2G160996


Description : Function unknown


Gene families : OG_42_0005489 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005489_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G160996
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
417184 No alias Function unknown 0.06 Orthogroups_2024-Update
At5g41190 No alias RNA-binding NOB1-like protein... 0.03 Orthogroups_2024-Update
Brara.D01131.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.05 Orthogroups_2024-Update
Brara.G01511.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.05 Orthogroups_2024-Update
Cre01.g031750 No alias Function unknown 0.03 Orthogroups_2024-Update
Mp1g16460.1 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.02 Orthogroups_2024-Update
Potri.003G124700 No alias Function unknown 0.02 Orthogroups_2024-Update
Seita.1G116900.1 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 Orthogroups_2024-Update
evm.model.contig_727.1 No alias (at5g41190 : 100.0) CONTAINS InterPro DOMAIN/s: Nin one... 0.02 Orthogroups_2024-Update
evm.model.tig00020964.11 No alias (at5g41190 : 112.0) CONTAINS InterPro DOMAIN/s: Nin one... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 57 143
IPR014881 NOB1_Zn-bd 423 493
No external refs found!