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At1g43980


Description : Pentatricopeptide repeat-containing protein At1g43980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LP03]


Gene families : OG_42_0009565 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009565_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g43980
Cluster HCCA clusters: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G120100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 310
IPR002885 Pentatricopeptide_repeat 213 241
IPR002885 Pentatricopeptide_repeat 182 211
IPR002885 Pentatricopeptide_repeat 416 440
IPR002885 Pentatricopeptide_repeat 314 336
IPR002885 Pentatricopeptide_repeat 112 154
No external refs found!