GRMZM2G163939

Description : Histone superfamily protein

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G163939
Cluster	HCCA clusters: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
Brara.J01445.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
Cre06.g271376	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G086610.4	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
MA_10435143g0020	No alias	(at3g45980 : 145.0) Encodes a histone 2B (H2B) protein....	0.02	Orthogroups_2024-Update
Mp4g13450.1	No alias	histone (H2B)	0.02	Orthogroups_2024-Update
Solyc03g071620	No alias	Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g007930	No alias	Histone H2B (AHRD V3.3 *** K4D554_SOLLC)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predicted GO
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006401	RNA catabolic process	IEP	Predicted GO
BP	GO:0006402	mRNA catabolic process	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
MF	GO:0031369	translation initiation factor binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	4	125

External Links

No external refs found!