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GRMZM2G164088


Description : Alba DNA/RNA-binding protein


Gene families : OG_42_0000903 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G164088
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
A4A49_06816 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Brara.H02335.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.03 Orthogroups_2024-Update
HORVU4Hr1G074450.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G084510.3 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.04 Orthogroups_2024-Update
LOC_Os03g06980 No alias nucleic acid binding protein, putative, expressed 0.02 Orthogroups_2024-Update
Seita.2G292300.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 Orthogroups_2024-Update
Seita.8G046100.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 Orthogroups_2024-Update
Seita.9G528100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G099800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G493400.2 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.002G281600.1 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.03 Orthogroups_2024-Update
Solyc06g083540 No alias Alba DNA/RNA-binding protein (AHRD V3.3 *-* AT3G07030.5) 0.03 Orthogroups_2024-Update
Solyc09g061710 No alias Alba DNA/RNA-binding protein (AHRD V3.3 *-* AT3G07030.5) 0.04 Orthogroups_2024-Update
Sopen06g034920 No alias Alba 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 82
No external refs found!