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GRMZM2G164956


Description : DEAD box RNA helicase (PRH75)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G164956
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Brara.I00682.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.contig_3385.6 No alias (at5g26742 : 365.0) embryo defective 1138 (emb1138);... 0.02 Orthogroups_2024-Update
evm.model.contig_3450.5 No alias (q41382|rh7_spiol : 422.0) DEAD-box ATP-dependent RNA... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
MF GO:0098599 palmitoyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012562 GUCT 558 653
IPR001650 Helicase_C 369 468
IPR011545 DEAD/DEAH_box_helicase_dom 147 325
No external refs found!