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  5. GRMZM2G165521

GRMZM2G165521


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G165521
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.03G073766 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G057300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G161900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G080630.6 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G095490.1 No alias RNA editing factor *(ECD1) 0.03 Orthogroups_2024-Update
HORVU6Hr1G027560.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os07g39090 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
Potri.001G186500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G322100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G065500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G031700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G203900.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G400300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G008500.1 No alias RNA editing factor *(CRR22) 0.04 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Seita.7G205600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G324400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.04 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G514800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G009400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G109000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G110550.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 598 621
IPR002885 Pentatricopeptide_repeat 224 248
IPR002885 Pentatricopeptide_repeat 194 221
IPR002885 Pentatricopeptide_repeat 297 320
IPR002885 Pentatricopeptide_repeat 420 468
IPR002885 Pentatricopeptide_repeat 324 367
IPR002885 Pentatricopeptide_repeat 523 570
IPR002885 Pentatricopeptide_repeat 120 167
IPR032867 DYW_dom 697 820
No external refs found!