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GRMZM2G167356


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G167356
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
At4g14300 No alias Heterogeneous nuclear ribonucleoprotein 1... 0.02 Orthogroups_2024-Update
Kfl00222_0020 kfl00222_0020_v1.1 (at1g17640 : 196.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update
MA_141102g0010 No alias (at3g13224 : 259.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.002G115000 No alias RNA-binding protein 1 0.02 Orthogroups_2024-Update
Pp1s84_58V6 No alias heterogeneous nuclear ribonucleoprotein 0.02 Orthogroups_2024-Update
Seita.9G226400.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 146 215
IPR000504 RRM_dom 57 124
No external refs found!