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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G170896 | |
| Cluster | HCCA clusters: Cluster_126 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 131810 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.01 | Orthogroups_2024-Update | |
| 134463 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
| 98955 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g14470 | No alias | Pentatricopeptide repeat-containing protein At1g14470... | 0.03 | Orthogroups_2024-Update | |
| At1g31920 | No alias | Pentatricopeptide repeat-containing protein At1g31920... | 0.03 | Orthogroups_2024-Update | |
| At2g34400 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Orthogroups_2024-Update | |
| At5g40410 | No alias | Pentatricopeptide repeat-containing protein At5g40410,... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g27320 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi5g01440 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A03095.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.B00112.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Glyma.03G264700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.04G203500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G252400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.09G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G012210.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU2Hr1G053030.5 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g46980 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os02g53050 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g39910 | No alias | pentatricopeptide repeat domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
| PSME_00005130-RA | No alias | (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... | 0.02 | Orthogroups_2024-Update | |
| PSME_00006211-RA | No alias | (at3g46790 : 145.0) Encodes a member of a PCMP (plant... | 0.02 | Orthogroups_2024-Update | |
| PSME_00034399-RA | No alias | (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Pp1s68_207V6 | No alias | ppr gene for putative pentatricopeptide repeat-like protein PPR | 0.03 | Orthogroups_2024-Update | |
| Seita.3G227100.1 | No alias | RNA editing factor *(MEF21) | 0.02 | Orthogroups_2024-Update | |
| Seita.3G244200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.4G168200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G162400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G403900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G384800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc02g069500 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen01g032600 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041720 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen05g007940 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen09g027460 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen11g024580 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 744 | 864 |
| IPR002885 | Pentatricopeptide_repeat | 189 | 215 |
| IPR002885 | Pentatricopeptide_repeat | 78 | 100 |
| IPR002885 | Pentatricopeptide_repeat | 539 | 564 |
| IPR002885 | Pentatricopeptide_repeat | 465 | 491 |
| IPR002885 | Pentatricopeptide_repeat | 218 | 246 |
| IPR002885 | Pentatricopeptide_repeat | 565 | 612 |
| IPR002885 | Pentatricopeptide_repeat | 317 | 362 |
| No external refs found! |