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  5. GRMZM2G172904

GRMZM2G172904


Description : RNI-like superfamily protein


Gene families : OG_42_0000249 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000249_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G172904
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Seita.7G116200.1 No alias substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase... 0.05 Orthogroups_2024-Update
Sobic.004G229100.1 No alias regulatory protein *(FBW2) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
Sobic.007G090445.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc08g013750 No alias F-box family protein (AHRD V3.3 *-* D7M2J7_ARALL) 0.02 Orthogroups_2024-Update
Sopen08g004650 No alias F-box-like 0.02 Orthogroups_2024-Update
Sopen11g004820 No alias hypothetical protein 0.02 Orthogroups_2024-Update
evm.model.contig_3643.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 18 61
No external refs found!