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  5. GRMZM2G173105

GRMZM2G173105


Description : FAD-binding Berberine family protein


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G173105
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Bradi1g38250 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Bradi3g35067 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Bradi5g17300 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Brara.G00589.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.K01807.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
LOC_Os02g14090 No alias berberine and berberine like domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00036068-RA No alias (at1g30760 : 377.0) FAD-binding Berberine family... 0.03 Orthogroups_2024-Update
Seita.6G216800.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Solyc02g079440 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT4G20860.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 90 228
IPR012951 BBE 479 539
No external refs found!