1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At1g48650

At1g48650


Description : DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g48650
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
173775 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
A4A49_10022 No alias dexh-box atp-dependent rna helicase dexh3 0.03 Orthogroups_2024-Update
Bradi3g28477 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi5g10330 No alias RNA helicase family protein 0.07 Orthogroups_2024-Update
Cre06.g266416 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
GRMZM2G399212 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.10G082300 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.17G001100 No alias RNA helicase family protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G039880.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G094990.5 No alias group-I intron splicing RNA helicase *(ABO6) 0.02 Orthogroups_2024-Update
Kfl00017_0530 kfl00017_0530_v1.... (at2g35920 : 694.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Kfl00612_0020 kfl00612_0020_v1.1 (at2g35920 : 974.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Kfl00858_0010 kfl00858_0010_v1.1 (at2g35920 : 310.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
MA_177779g0010 No alias (at2g35920 : 291.0) RNA helicase family protein;... 0.03 Orthogroups_2024-Update
Potri.010G117800 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Pp1s36_206V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Seita.5G079500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G092100.1 No alias group-I intron splicing RNA helicase *(ABO6) 0.02 Orthogroups_2024-Update
evm.model.tig00021127.75 No alias (at2g35920 : 181.0) RNA helicase family protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 309 460
IPR001650 Helicase_C 569 697
IPR014720 dsRBD_dom 1102 1163
IPR011709 DUF1605 916 998
IPR007502 Helicase-assoc_dom 761 850
No external refs found!