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  5. GRMZM2G176735

GRMZM2G176735


Description : Vacuolar sorting protein 39


Gene families : OG_42_0005241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G176735
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Mp3g21320.1 No alias HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.02 Orthogroups_2024-Update
Sobic.001G114000.1 No alias HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 Orthogroups_2024-Update
evm.model.contig_2262.3 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 507 617
IPR001180 CNH_dom 115 286
IPR000547 Clathrin_H-chain/VPS_repeat 636 768
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 870 978
No external refs found!