1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM2G177229

GRMZM2G177229


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G177229
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45900 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Glyma.12G181300 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G073680.3 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update
LOC_Os09g31482 No alias splicing factor U2AF, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00011987-RA No alias (at1g27650 : 243.0) U2 auxiliary factor small subunit.... 0.02 Orthogroups_2024-Update
PSME_00027172-RA No alias (at5g42820 : 293.0) U2 auxiliary factor small subunit.... 0.03 Orthogroups_2024-Update
Seita.6G010500.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Orthogroups_2024-Update
Sobic.002G249500.2 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 Orthogroups_2024-Update
Sopen11g026540 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
BP GO:0017003 protein-heme linkage IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 150 174
IPR000571 Znf_CCCH 14 38
IPR000504 RRM_dom 84 139
No external refs found!