At1g48830

Description : 40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0]

Gene families : OG_42_0002228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002228_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At1g48830
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
148446	No alias	Ribosomal protein S7e family protein	0.07	Orthogroups_2024-Update
A4A49_59553	No alias	40s ribosomal protein s7-1	0.06	Orthogroups_2024-Update
Bradi1g65150	No alias	Ribosomal protein S7e family protein	0.08	Orthogroups_2024-Update
Bradi3g23310	No alias	Ribosomal protein S7e family protein	0.06	Orthogroups_2024-Update
Brara.C00708.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.C02996.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.E03571.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.J01899.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Cre12.g498900	No alias	Ribosomal protein S7e family protein	0.04	Orthogroups_2024-Update
Glyma.05G238000	No alias	Ribosomal protein S7e family protein	0.07	Orthogroups_2024-Update
Glyma.07G092900	No alias	Ribosomal protein S7e family protein	0.03	Orthogroups_2024-Update
Glyma.08G045100	No alias	Ribosomal protein S7e family protein	0.1	Orthogroups_2024-Update
Glyma.09G183300	No alias	Ribosomal protein S7e family protein	0.08	Orthogroups_2024-Update
Glyma.13G045800	No alias	Ribosomal protein S7e family protein	0.04	Orthogroups_2024-Update
Glyma.19G049200	No alias	Ribosomal protein S7e family protein	0.07	Orthogroups_2024-Update
HORVU1Hr1G029870.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU4Hr1G055230.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.03	Orthogroups_2024-Update
Potri.006G087900	No alias	Ribosomal protein S7e family protein	0.06	Orthogroups_2024-Update
Pp1s134_167V6	No alias	40s ribosomal protein expressed	0.03	Orthogroups_2024-Update
Pp1s152_7V6	No alias	40s ribosomal protein expressed	0.08	Orthogroups_2024-Update
Pp1s365_30V6	No alias	40S ribosomal protein S7 [Brassica oleracea]	0.03	Orthogroups_2024-Update
Pp1s49_260V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Seita.3G280800.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Seita.9G437500.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.001G403500.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.009G101700.2	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Solyc03g119360	No alias	40S ribosomal protein S7-like protein (AHRD V3.3 ***...	0.08	Orthogroups_2024-Update
Solyc06g069090	No alias	40S ribosomal protein S7-like protein (AHRD V3.3 ***...	0.08	Orthogroups_2024-Update
Sopen03g038230	No alias	Ribosomal protein S7e	0.05	Orthogroups_2024-Update
Sopen06g026370	No alias	Ribosomal protein S7e	0.08	Orthogroups_2024-Update
evm.model.contig_2068.1	No alias	(at1g48830 : 206.0) Ribosomal protein S7e family...	0.1	Orthogroups_2024-Update
evm.model.tig00021682.9	No alias	(q9xet4\|rs7_secce : 233.0) 40S ribosomal protein S7 -...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003896	DNA primase activity	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0003909	DNA ligase activity	IEP	Predicted GO
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016851	magnesium chelatase activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Predicted GO
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	7	187

External Links

No external refs found!

At1g48830

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation