At1g49210


Description : E3 ubiquitin-protein ligase ATL76 [Source:UniProtKB/Swiss-Prot;Acc:Q6NML0]


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g49210
Cluster HCCA clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
A4A49_18116 No alias ring-h2 finger protein atl78 0.01 Orthogroups_2024-Update
A4A49_36900 No alias putative ring-h2 finger protein atl37 0.02 Orthogroups_2024-Update
A4A49_39617 No alias ring-h2 finger protein atl1 0.03 Orthogroups_2024-Update
A4A49_40392 No alias ring-h2 finger protein atl58 0.05 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.01 Orthogroups_2024-Update
At1g49200 No alias RING-H2 finger protein ATL75... 0.01 Orthogroups_2024-Update
At2g42350 No alias RING-H2 finger protein ATL40... 0.02 Orthogroups_2024-Update
At4g10150 No alias RING-H2 finger protein ATL7... 0.02 Orthogroups_2024-Update
Bradi1g46750 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g37430 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Brara.A03044.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.B02021.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00038.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E01533.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.G00998.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I04330.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J02480.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Glyma.02G194400 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.07G062800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G078800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G121400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os05g39940 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g16060 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g34650 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10244600g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_2679g0010 No alias (at3g16720 : 111.0) RING-H2 protein induced after... 0.01 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_41514g0010 No alias (at5g01880 : 91.3) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
PSME_00051307-RA No alias (at3g18773 : 100.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
Potri.001G309600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G201500 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.01 Orthogroups_2024-Update
Potri.007G064400 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Potri.010G206300 No alias TOXICOS EN LEVADURA 2 0.01 Orthogroups_2024-Update
Potri.010G243400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G136200 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Pp1s41_270V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.1 Orthogroups_2024-Update
Seita.2G037300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G410900.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc01g088450 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G53820.1) 0.04 Orthogroups_2024-Update
Solyc01g100100 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update
Solyc02g086950 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc11g005320 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.05 Orthogroups_2024-Update
Sopen01g037550 No alias Ring finger domain 0.01 Orthogroups_2024-Update
Sopen01g048080 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen01g051390 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen10g005280 No alias Ring finger domain 0.01 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001300 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 134 177
No external refs found!