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  5. GRMZM2G180418

GRMZM2G180418


Description : plastid transcriptionally active 17


Gene families : OG_42_0001486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G180418
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
405512 No alias Cobalamin biosynthesis CobW-like protein 0.03 Orthogroups_2024-Update
At1g15730 No alias At1g15730/F7H2_7 [Source:UniProtKB/TrEMBL;Acc:Q9LMR1] 0.02 Orthogroups_2024-Update
Cre05.g234652 No alias plastid transcriptionally active 17 0.01 Orthogroups_2024-Update
Glyma.20G240400 No alias plastid transcriptionally active 17 0.03 Orthogroups_2024-Update
Sobic.004G333400.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.03 Orthogroups_2024-Update
Sobic.006G202000.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.02 Orthogroups_2024-Update
Sopen08g024670 No alias PWWP domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 667 761
IPR003495 CobW/HypB/UreG_dom 407 590
No external refs found!