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  5. Solyc03g033500

Solyc03g033500


Description : Zinc knuckle family protein (AHRD V3.3 *-* A0A061FDW4_THECC)


Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g033500
Cluster HCCA clusters: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
Bradi2g07090 No alias cold shock domain protein 1 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 75 90
IPR001878 Znf_CCHC 104 120
IPR001878 Znf_CCHC 48 62
IPR001878 Znf_CCHC 135 150
IPR001878 Znf_CCHC 176 192
IPR001878 Znf_CCHC 21 36
No external refs found!