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  5. GRMZM2G312954

GRMZM2G312954


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009884 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009884_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G312954
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Bradi1g15820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G089200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G295200.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 790 820
IPR002885 Pentatricopeptide_repeat 491 519
IPR002885 Pentatricopeptide_repeat 175 204
IPR002885 Pentatricopeptide_repeat 350 396
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 828 877
IPR002885 Pentatricopeptide_repeat 727 770
IPR002885 Pentatricopeptide_repeat 522 571
IPR002885 Pentatricopeptide_repeat 210 255
IPR002885 Pentatricopeptide_repeat 627 674
IPR002885 Pentatricopeptide_repeat 277 325
No external refs found!