GRMZM2G334457

Description : SIN3-like 4

Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G334457
Cluster	HCCA clusters: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
At1g59890	No alias	SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]	0.03	Orthogroups_2024-Update
At3g01320	No alias	Paired amphipathic helix protein Sin3-like 1...	0.03	Orthogroups_2024-Update
At5g15020	No alias	Paired amphipathic helix protein Sin3-like 2...	0.02	Orthogroups_2024-Update
Bradi2g00860	No alias	SIN3-like 4	0.06	Orthogroups_2024-Update
Bradi2g40052	No alias	SIN3-like 4	0.05	Orthogroups_2024-Update
Glyma.01G038300	No alias	SIN3-like 4	0.04	Orthogroups_2024-Update
Glyma.02G026700	No alias	SIN3-like 4	0.04	Orthogroups_2024-Update
Glyma.08G292900	No alias	SIN3-like 3	0.04	Orthogroups_2024-Update
Glyma.13G067800	No alias	SIN3-like 2	0.03	Orthogroups_2024-Update
Glyma.18G130400	No alias	SIN3-like 4	0.04	Orthogroups_2024-Update
Glyma.19G016300	No alias	SIN3-like 2	0.03	Orthogroups_2024-Update
HORVU1Hr1G000290.3	No alias	component *(SNL) of histone deacetylase machineries	0.03	Orthogroups_2024-Update
Kfl00311_0140	kfl00311_0140_v1.1	(at5g15020 : 616.0) Encodes a homolog of the...	0.02	Orthogroups_2024-Update
MA_18241g0010	No alias	(at1g70060 : 799.0) Encodes a homolog of the...	0.04	Orthogroups_2024-Update
Mp3g02880.1	No alias	component SNL of histone deacetylase machineries	0.03	Orthogroups_2024-Update
Potri.010G038700	No alias	SIN3-like 4	0.02	Orthogroups_2024-Update
Seita.5G073400.1	No alias	component *(SNL) of histone deacetylase machineries	0.03	Orthogroups_2024-Update
Sobic.003G101400.1	No alias	component *(SNL) of histone deacetylase machineries	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0004347	glucose-6-phosphate isomerase activity	IEP	Predicted GO
CC	GO:0005685	U1 snRNP	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006094	gluconeogenesis	IEP	Predicted GO
BP	GO:0006376	mRNA splice site selection	IEP	Predicted GO
BP	GO:0006606	protein import into nucleus	IEP	Predicted GO
MF	GO:0008199	ferric iron binding	IEP	Predicted GO
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
BP	GO:0019319	hexose biosynthetic process	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predicted GO
MF	GO:0031369	translation initiation factor binding	IEP	Predicted GO
BP	GO:0033365	protein localization to organelle	IEP	Predicted GO
BP	GO:0034504	protein localization to nucleus	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Predicted GO
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0051170	import into nucleus	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predicted GO
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predicted GO
CC	GO:0120114	Sm-like protein family complex	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
CC	GO:1903293	phosphatase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR031693	Sin3_C	804	1052
IPR003822	PAH	30	74
IPR013194	HDAC_interact_dom	168	260

External Links

No external refs found!

GRMZM2G334457

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation