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  5. Solyc01g016410

Solyc01g016410


Description : RING/U-box superfamily protein (AHRD V3.3 *-* AT5G08139.1)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g016410
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G157855 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g58780 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_281830g0010 No alias (at5g08139 : 89.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Solyc02g082890 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g009170 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G19950.3) 0.03 Orthogroups_2024-Update
Sopen03g033750 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen09g029310 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 129 171
No external refs found!