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  5. At1g55060

At1g55060


Description : Polyubiquitin 12 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7K8]


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g55060
Cluster HCCA clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
271198 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
A4A49_13911 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
A4A49_39502 No alias polyubiquitin 10 0.05 Orthogroups_2024-Update
Bradi4g30470 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Brara.F02490.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
GRMZM2G118637 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Glyma.15G129800 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G019590.12 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G019600.6 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G020140.6 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G029150.2 No alias RUB ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Kfl00348_0100 kfl00348_0100_v1.... (at2g35635 : 236.0) encodes a ubiquitin-like protein... 0.03 Orthogroups_2024-Update
MA_369963g0010 No alias (at5g03240 : 444.0) encodes ubiquitin that is attached... 0.04 Orthogroups_2024-Update
MA_8884419g0010 No alias (at3g62250 : 211.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Mp6g03960.1 No alias ubiquitin-fold protein (UBQ) 0.02 Orthogroups_2024-Update
Pp1s65_290V6 No alias polyubiqutin 1 0.02 Orthogroups_2024-Update
Seita.2G321300.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.002G309000.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 79 150
No external refs found!