GRMZM2G392798

Description : polyribonucleotide nucleotidyltransferase, putative

Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G392798
Cluster	HCCA clusters: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
At5g14580	No alias	Polyribonucleotide nucleotidyltransferase 2,...	0.03	Orthogroups_2024-Update
Bradi3g48860	No alias	polyribonucleotide nucleotidyltransferase, putative	0.02	Orthogroups_2024-Update
Brara.C03030.1	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.03	Orthogroups_2024-Update
Brara.J02010.1	No alias	phosphorolytic exoribonuclease *(PNP) & EC_2.7...	0.03	Orthogroups_2024-Update
HORVU6Hr1G057570.8	No alias	phosphorolytic exoribonuclease *(PNP) & EC_2.7...	0.03	Orthogroups_2024-Update
Potri.001G347900	No alias	polyribonucleotide nucleotidyltransferase, putative	0.02	Orthogroups_2024-Update
evm.model.tig00020603.85	No alias	(at5g14580 : 224.0) polyribonucleotide...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0004784	superoxide dismutase activity	IEP	Predicted GO
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006694	steroid biosynthetic process	IEP	Predicted GO
MF	GO:0016636	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	IEP	Predicted GO
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
MF	GO:0051743	red chlorophyll catabolite reductase activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR015847	ExoRNase_PH_dom2	207	270
IPR001247	ExoRNase_PH_dom1	385	518
IPR001247	ExoRNase_PH_dom1	74	204
IPR003029	S1_domain	684	755
IPR015848	PNPase_PH_RNA-bd_bac/org-type	304	382

External Links

No external refs found!