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  5. GRMZM2G399433

GRMZM2G399433


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G399433
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
71953 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_11989 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.02 Orthogroups_2024-Update
At2g46050 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.02 Orthogroups_2024-Update
Bradi2g57140 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00112.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G01254.1 No alias RNA editing factor *(CREF7) 0.02 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G320723 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G252400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G313300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G066100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G107430.1 No alias RNA editing factor *(MEF10) 0.04 Orthogroups_2024-Update
HORVU3Hr1G052470.6 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g59890 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g64370 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_168311g0010 No alias (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_17949g0010 No alias (at3g57430 : 648.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_465411g0010 No alias (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.006G076100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G080200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g026530 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 920 1045
IPR021480 Zinc_ribbon_12 260 301
IPR002885 Pentatricopeptide_repeat 749 779
IPR002885 Pentatricopeptide_repeat 821 845
IPR002885 Pentatricopeptide_repeat 543 568
IPR002885 Pentatricopeptide_repeat 720 746
IPR002885 Pentatricopeptide_repeat 643 670
No external refs found!