1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At1g56110

At1g56110


Description : At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]


Gene families : OG_42_0003242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003242_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g56110
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
167367 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
A4A49_34611 No alias putative nucleolar protein 5-2 0.04 Orthogroups_2024-Update
Bradi1g18730 No alias NOP56-like pre RNA processing ribonucleoprotein 0.14 Orthogroups_2024-Update
Bradi1g32180 No alias homolog of nucleolar protein NOP56 0.1 Orthogroups_2024-Update
Brara.C03437.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.1 Orthogroups_2024-Update
Brara.F00004.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.12 Orthogroups_2024-Update
Brara.H00011.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.11 Orthogroups_2024-Update
Cre12.g525200 No alias homolog of nucleolar protein NOP56 0.07 Orthogroups_2024-Update
GRMZM2G110233 No alias homolog of nucleolar protein NOP56 0.06 Orthogroups_2024-Update
Glyma.05G046400 No alias homolog of nucleolar protein NOP56 0.04 Orthogroups_2024-Update
Glyma.07G102600 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
Glyma.17G128400 No alias homolog of nucleolar protein NOP56 0.04 Orthogroups_2024-Update
HORVU1Hr1G083960.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
HORVU2Hr1G022140.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
LOC_Os03g22880 No alias nucleolar protein 5A, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g23840.1 No alias snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 Orthogroups_2024-Update
PSME_00040484-RA No alias (at1g56110 : 422.0) NOP56-like protein; homolog of... 0.03 Orthogroups_2024-Update
Potri.012G095400 No alias homolog of nucleolar protein NOP56 0.05 Orthogroups_2024-Update
Potri.015G092900 No alias homolog of nucleolar protein NOP56 0.06 Orthogroups_2024-Update
Pp1s15_447V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.9G403000.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.09 Orthogroups_2024-Update
Sobic.001G371100.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.12 Orthogroups_2024-Update
Solyc01g100570 No alias Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC) 0.13 Orthogroups_2024-Update
Sopen01g044070 No alias Putative snoRNA binding domain 0.08 Orthogroups_2024-Update
evm.model.contig_3492.5 No alias (at1g56110 : 469.0) NOP56-like protein; homolog of... 0.02 Orthogroups_2024-Update
evm.model.tig00001073.20 No alias (at1g56110 : 570.0) NOP56-like protein; homolog of... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 177 409
IPR012974 NOP5_N 4 69
No external refs found!