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GRMZM2G411536


Description : ubiquitin-protein ligase 2


Gene families : OG_42_0001888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G411536
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07997 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
Glyma.02G216000 No alias ubiquitin-protein ligase 1 0.02 Orthogroups_2024-Update
Glyma.05G133100 No alias ubiquitin-protein ligase 1 0.02 Orthogroups_2024-Update
Glyma.06G098700 No alias ubiquitin-protein ligase 1 0.03 Orthogroups_2024-Update
Glyma.08G087600 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
Kfl00780_0030 kfl00780_0030_v1.1 (at1g55860 : 726.0) encodes a ubiquitin-protein ligase... 0.03 Orthogroups_2024-Update
MA_20049g0010 No alias (at1g55860 : 1461.0) encodes a ubiquitin-protein ligase... 0.04 Orthogroups_2024-Update
MA_7295g0020 No alias (at1g70320 : 866.0) encodes a ubiquitin-protein... 0.04 Orthogroups_2024-Update
Pp1s268_65V6 No alias probable ubiquitin ligase tom1p fragment 0.02 Orthogroups_2024-Update
Pp1s42_128V6 No alias e3 ubiquitin protein ligase 0.02 Orthogroups_2024-Update
Seita.3G302600.1 No alias E3 ubiquitin ligase *(UPL1) 0.04 Orthogroups_2024-Update
Sobic.002G147600.1 No alias E3 ubiquitin ligase *(UPL1) 0.03 Orthogroups_2024-Update
Sobic.008G092600.1 No alias E3 ubiquitin ligase *(UPL1) 0.04 Orthogroups_2024-Update
Solyc04g076620 No alias E3 ubiquitin-protein ligase UPL1-like protein (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010309 E3_Ub_ligase_DUF908 110 410
IPR000569 HECT_dom 3320 3633
IPR025527 DUF4414 2591 2622
IPR025527 DUF4414 2631 2662
IPR025527 DUF4414 2555 2581
IPR015940 UBA 1293 1330
IPR010314 E3_Ub_ligase_DUF913 473 798
No external refs found!