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  5. GRMZM2G418604

GRMZM2G418604


Description : binding;RNA binding


Gene families : OG_42_0004320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G418604
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Bradi3g49427 No alias binding;RNA binding 0.03 Orthogroups_2024-Update
Seita.1G242900.1 No alias component *(UPF2) of RNA quality control Exon Junction complex 0.03 Orthogroups_2024-Update
evm.model.contig_437.1 No alias (at2g39260 : 242.0) binding;RNA binding; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
evm.model.tig00022080.18 No alias (at2g39260 : 119.0) binding;RNA binding; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 593 786
IPR003890 MIF4G-like_typ-3 389 575
IPR007193 Upf2/Nmd2_C 908 1044
No external refs found!