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GRMZM2G427031


Description : nuclear RNA polymerase D2A


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G427031
Cluster HCCA clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
118653 No alias DNA-directed RNA polymerase family protein 0.03 Orthogroups_2024-Update
MA_10432131g0010 No alias (at4g21710 : 490.0) Encodes the unique second-largest... 0.05 Orthogroups_2024-Update
PSME_00021632-RA No alias (at3g18090 : 612.0) Encodes a subunit of RNA polymerase... 0.04 Orthogroups_2024-Update
Sobic.001G155000.1 No alias component *(NRPB2) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
Sopen10g029490 No alias RNA polymerase Rpb2, domain 6 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
CC GO:0005737 cytoplasm IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 2062 2160
IPR007646 RNA_pol_Rpb2_4 1559 1620
IPR007642 RNA_pol_Rpb2_2 1258 1386
IPR007320 PDCD2_C 648 762
IPR007120 DNA-dir_RNAP_su2_dom 1690 2060
IPR007645 RNA_pol_Rpb2_3 1463 1523
IPR007644 RNA_pol_bsu_protrusion 1037 1434
IPR007647 RNA_pol_Rpb2_5 1635 1681
No external refs found!