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At1g60200


Description : Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VY15]


Gene families : OG_42_0005903 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005903_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g60200
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Bradi3g35870 No alias splicing factor PWI domain-containing protein / RNA... 0.04 Orthogroups_2024-Update
Glyma.01G031400 No alias splicing factor PWI domain-containing protein / RNA... 0.03 Orthogroups_2024-Update
Seita.6G145200.1 No alias pre-mRNA splicing factor *(RBM25) 0.03 Orthogroups_2024-Update
Solyc05g005620 No alias RNA-binding 25 (AHRD V3.3 *** A0A0B0MSI7_GOSAR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
BP GO:0006397 mRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 222 274
IPR002483 PWI_dom 821 885
No external refs found!