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  5. GRMZM2G460090

GRMZM2G460090


Description : HEAT repeat ;WD domain, G-beta repeat protein protein


Gene families : OG_42_0002801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G460090
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Bradi4g44667 No alias HEAT repeat ;WD domain, G-beta repeat protein protein 0.05 Orthogroups_2024-Update
Glyma.09G278500 No alias HEAT repeat ;WD domain, G-beta repeat protein protein 0.05 Orthogroups_2024-Update
Mp1g26150.1 No alias regulatory component RAPTOR of TORC complex 0.02 Orthogroups_2024-Update
Pp1s199_73V6 No alias T16O11.22; transducin family protein / WD-40 repeat... 0.02 Orthogroups_2024-Update
Seita.8G016500.1 No alias regulatory component *(RAPTOR) of TORC complex 0.03 Orthogroups_2024-Update
Sobic.005G008800.1 No alias regulatory component *(RAPTOR) of TORC complex 0.03 Orthogroups_2024-Update
Sobic.008G009700.1 No alias regulatory component *(RAPTOR) of TORC complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 576 616
IPR001680 WD40_repeat 819 841
No external refs found!