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Description : RNA binding
Gene families : OG_42_0004539 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004539_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G468932 | |
| Cluster | HCCA clusters: Cluster_115 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At4g15770 | No alias | 60S ribosome subunit biogenesis protein NIP7 homolog... | 0.04 | Orthogroups_2024-Update | |
| Brara.H00822.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G019810.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Kfl00307_0030 | kfl00307_0030_v1.1 | (at4g15770 : 268.0) RNA binding; FUNCTIONS IN: RNA... | 0.02 | Orthogroups_2024-Update | |
| Pp1s104_30V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Seita.9G032900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G325200.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc01g098100 | No alias | 60S ribosome subunit biogenesis protein NIP7 homolog... | 0.06 | Orthogroups_2024-Update | |
| Sopen01g041670 | No alias | Uncharacterised protein family (UPF0113) | 0.02 | Orthogroups_2024-Update | |
| evm.model.contig_3401.15 | No alias | (at4g15770 : 210.0) RNA binding; FUNCTIONS IN: RNA... | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00020684.42 | No alias | (at4g15770 : 193.0) RNA binding; FUNCTIONS IN: RNA... | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Predicted GO |
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Predicted GO |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0031167 | rRNA methylation | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| BP | GO:0070475 | rRNA base methylation | IEP | Predicted GO |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005155 | Rbsml_synth_fac_NIP7-like | 105 | 183 |
| No external refs found! |