1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g044000

Solyc03g044000


Description : 60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)


Gene families : OG_42_0002250 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g044000
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
227399 No alias Translation protein SH3-like family protein 0.1 Orthogroups_2024-Update
A4A49_01785 No alias 60s ribosomal protein l26-1 0.04 Orthogroups_2024-Update
A4A49_64025 No alias 60s ribosomal protein l26-1 0.06 Orthogroups_2024-Update
At3g49910 No alias 60S ribosomal protein L26-1... 0.02 Orthogroups_2024-Update
Brara.A02158.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Brara.C04297.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I03333.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Cre01.g040000 No alias Translation protein SH3-like family protein 0.13 Orthogroups_2024-Update
Glyma.01G193800 No alias Translation protein SH3-like family protein 0.04 Orthogroups_2024-Update
Glyma.11G048100 No alias Translation protein SH3-like family protein 0.13 Orthogroups_2024-Update
Glyma.13G243100 No alias Translation protein SH3-like family protein 0.07 Orthogroups_2024-Update
Glyma.13G245300 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
Glyma.15G068500 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G026880.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00486_0110 kfl00486_0110_v1.1 (at3g49910 : 157.0) Translation protein SH3-like family... 0.07 Orthogroups_2024-Update
MA_13141g0010 No alias (at5g67510 : 168.0) Translation protein SH3-like family... 0.04 Orthogroups_2024-Update
Mp2g12870.1 No alias component RPL26 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00027135-RA No alias (at5g67510 : 172.0) Translation protein SH3-like family... 0.04 Orthogroups_2024-Update
Potri.007G055900 No alias Translation protein SH3-like family protein 0.07 Orthogroups_2024-Update
Potri.007G085200 No alias Translation protein SH3-like family protein 0.05 Orthogroups_2024-Update
Pp1s120_90V6 No alias putative ribosomal protein L26 [Oryza sativa (japonica... 0.16 Orthogroups_2024-Update
Pp1s13_138V6 No alias 60s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s30_298V6 No alias 60s ribosomal protein 0.09 Orthogroups_2024-Update
Pp1s69_191V6 No alias putative ribosomal protein L26 [Oryza sativa (japonica... 0.11 Orthogroups_2024-Update
Seita.5G096600.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.003G078200.1 No alias component *(uL24) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc02g092430 No alias 60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH) 0.08 Orthogroups_2024-Update
Sopen02g014760 No alias KOW motif 0.14 Orthogroups_2024-Update
Sopen02g036980 No alias KOW motif 0.07 Orthogroups_2024-Update
evm.model.contig_2053.5 No alias (at5g67510 : 146.0) Translation protein SH3-like family... 0.13 Orthogroups_2024-Update
evm.model.tig00000144.60 No alias (at3g49910 : 158.0) Translation protein SH3-like family... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
CC GO:0015934 large ribosomal subunit IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 51 82
IPR005756 Ribosomal_L26/L24P_euk/arc 8 121
No external refs found!