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  5. At1g65660

At1g65660


Description : SMP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8X4]


Gene families : OG_42_0003269 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003269_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g65660
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
164109 No alias Pre-mRNA splicing Prp18-interacting factor 0.02 Orthogroups_2024-Update
Glyma.07G134400 No alias Pre-mRNA splicing Prp18-interacting factor 0.05 Orthogroups_2024-Update
Glyma.18G183900 No alias Pre-mRNA splicing Prp18-interacting factor 0.04 Orthogroups_2024-Update
Sopen09g028380 No alias Pre-mRNA splicing Prp18-interacting factor 0.04 Orthogroups_2024-Update
evm.model.contig_3423.36 No alias (at1g65660 : 294.0) Encodes a CCHC zinc finger protein... 0.02 Orthogroups_2024-Update
evm.model.tig00000217.42 No alias (at1g65660 : 353.0) Encodes a CCHC zinc finger protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021715 Slu7_dom 136 405
No external refs found!