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Description : sigma factor A
Gene families : OG_42_0005642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005642_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM5G813933 | |
| Cluster | HCCA clusters: Cluster_57 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Glyma.09G223600 | No alias | sigma factor A | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G013300 | No alias | sigma factor A | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g06630 | No alias | RNA polymerase sigma factor, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| Seita.6G049900.1 | No alias | basal Sigma-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G053800.1 | No alias | basal Sigma-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| Solyc06g072710 | No alias | Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC) | 0.03 | Orthogroups_2024-Update | |
| Sopen06g029080 | No alias | Sigma-70 region 3 | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | Predicted GO |
| MF | GO:0004506 | squalene monooxygenase activity | IEP | Predicted GO |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Predicted GO |
| MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | Predicted GO |
| MF | GO:0005102 | signaling receptor binding | IEP | Predicted GO |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
| BP | GO:0006570 | tyrosine metabolic process | IEP | Predicted GO |
| BP | GO:0006571 | tyrosine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006751 | glutathione catabolic process | IEP | Predicted GO |
| MF | GO:0008083 | growth factor activity | IEP | Predicted GO |
| BP | GO:0008283 | cell proliferation | IEP | Predicted GO |
| MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | Predicted GO |
| BP | GO:0015858 | nucleoside transport | IEP | Predicted GO |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Predicted GO |
| MF | GO:0030545 | receptor regulator activity | IEP | Predicted GO |
| BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | Predicted GO |
| BP | GO:0043171 | peptide catabolic process | IEP | Predicted GO |
| BP | GO:0044273 | sulfur compound catabolic process | IEP | Predicted GO |
| MF | GO:0048018 | receptor ligand activity | IEP | Predicted GO |
| BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
| BP | GO:1901642 | nucleoside transmembrane transport | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |