1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM5G819452

GRMZM5G819452


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0006127 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006127_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM5G819452
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
419047 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
At2g21440 No alias Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJT4] 0.04 Orthogroups_2024-Update
Bradi1g05110 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Orthogroups_2024-Update
Brara.I04641.1 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.03 Orthogroups_2024-Update
Cre02.g104650 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 Orthogroups_2024-Update
Kfl00989_0040 kfl00989_0040_v1.1 (at2g21440 : 239.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Orthogroups_2024-Update
Potri.009G120900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Pp1s543_12V6 No alias rna binding motif protein 28 isoform 1 0.02 Orthogroups_2024-Update
Seita.9G051000.1 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.08 Orthogroups_2024-Update
Sobic.001G052400.2 No alias pre-60S ribosomal subunit assembly factor *(NOP4) 0.06 Orthogroups_2024-Update
Solyc01g109990 No alias RNA-binding family protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen01g052180 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
evm.model.contig_3690.3 No alias (at2g21440 : 145.0) RNA-binding (RRM/RBD/RNP motifs)... 0.05 Orthogroups_2024-Update
evm.model.tig00000144.75 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 26 87
No external refs found!