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Description : Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At1g67750 | |
| Cluster | HCCA clusters: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 407495 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_16801 | No alias | putative pectate lyase 1 | 0.04 | Orthogroups_2024-Update | |
| A4A49_23917 | No alias | putative pectate lyase 13 | 0.03 | Orthogroups_2024-Update | |
| At1g14420 | No alias | Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] | 0.04 | Orthogroups_2024-Update | |
| Brara.D00728.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.05 | Orthogroups_2024-Update | |
| Brara.G00533.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.06 | Orthogroups_2024-Update | |
| Brara.G02558.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.K00935.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.04 | Orthogroups_2024-Update | |
| Glyma.13G145900 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.17G126500 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G255900 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| MA_10426822g0020 | No alias | (at1g67750 : 481.0) Pectate lyase family protein;... | 0.03 | Orthogroups_2024-Update | |
| MA_97947g0010 | No alias | (at1g67750 : 510.0) Pectate lyase family protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00009672-RA | No alias | (at5g48900 : 608.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
| PSME_00017512-RA | No alias | (at4g24780 : 545.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| Potri.011G008100 | No alias | root hair specific 14 | 0.03 | Orthogroups_2024-Update | |
| Potri.014G178100 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s112_172V6 | No alias | pectate lyase | 0.04 | Orthogroups_2024-Update | |
| Seita.7G017900.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| MF | GO:0031072 | heat shock protein binding | IEP | Predicted GO |
| MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predicted GO |
| BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 141 | 325 |
| No external refs found! |