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  5. At1g68790

At1g68790


Description : Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42]


Gene families : OG_42_0001967 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g68790
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
A4A49_19303 No alias protein crowded nuclei 1 0.03 Orthogroups_2024-Update
Bradi2g50990 No alias little nuclei4 0.03 Orthogroups_2024-Update
Bradi3g53047 No alias little nuclei1 0.05 Orthogroups_2024-Update
GRMZM2G320013 No alias little nuclei4 0.03 Orthogroups_2024-Update
Glyma.02G101800 No alias nuclear matrix constituent protein-related 0.04 Orthogroups_2024-Update
Glyma.05G109300 No alias little nuclei4 0.05 Orthogroups_2024-Update
Glyma.08G256300 No alias little nuclei1 0.05 Orthogroups_2024-Update
Glyma.17G157900 No alias little nuclei4 0.05 Orthogroups_2024-Update
Glyma.18G280500 No alias little nuclei1 0.05 Orthogroups_2024-Update
HORVU6Hr1G069560.1 No alias nuclear lamina lamin-like protein *(CRWN) 0.02 Orthogroups_2024-Update
Kfl00193_0080 kfl00193_0080_v1.1 (at1g67230 : 101.0) Encodes a nuclear coiled-coil... 0.02 Orthogroups_2024-Update
MA_31023g0010 No alias (at5g65770 : 444.0) LITTLE NUCLEI4 (LINC4); EXPRESSED... 0.03 Orthogroups_2024-Update
Solyc03g045050 No alias Nuclear matrix constituent-like protein 1 (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!