Description : DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3]
Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At1g68990 | |
Cluster | HCCA clusters: Cluster_108 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi4g08880 | No alias | DNA/RNA polymerases superfamily protein | 0.06 | Orthogroups_2024-Update | |
HORVU5Hr1G051530.5 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.03 | Orthogroups_2024-Update | |
Pp1s246_118V6 | No alias | rna polymerase | 0.04 | Orthogroups_2024-Update | |
Seita.2G155900.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.03 | Orthogroups_2024-Update | |
Seita.4G194800.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.03 | Orthogroups_2024-Update | |
Sobic.002G378100.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.03 | Orthogroups_2024-Update | |
Solyc05g010660 | No alias | DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC) | 0.03 | Orthogroups_2024-Update | |
Sopen05g006460 | No alias | DNA-dependent RNA polymerase | 0.06 | Orthogroups_2024-Update | |
evm.model.contig_511.3 | No alias | (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... | 0.04 | Orthogroups_2024-Update | |
evm.model.tig00021493.48 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00021493.49 | No alias | (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... | 0.07 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
No external refs found! |