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  5. GRMZM5G856434

GRMZM5G856434


Description : Sas10/Utp3/C1D family


Gene families : OG_42_0001862 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001862_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM5G856434
Cluster HCCA clusters: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
At2g43650 No alias Sas10/U3 ribonucleoprotein (Utp) family protein... 0.04 Orthogroups_2024-Update
Bradi2g13337 No alias Sas10/U3 ribonucleoprotein (Utp) family protein 0.03 Orthogroups_2024-Update
Brara.C02216.1 No alias regulatory protein *(THAL) of rRNA transcription control 0.03 Orthogroups_2024-Update
Cre09.g394399 No alias Sas10/U3 ribonucleoprotein (Utp) family protein 0.01 Orthogroups_2024-Update
Mp4g18120.1 No alias no hits & (original description: none) 0.03 Orthogroups_2024-Update
Potri.005G152200 No alias Sas10/Utp3/C1D family 0.02 Orthogroups_2024-Update
Seita.2G273300.1 No alias regulatory protein *(THAL) of rRNA transcription control 0.03 Orthogroups_2024-Update
Seita.5G423500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G397700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen11g029990 No alias Sas10 C-terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_2062.9 No alias (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3606.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00022075.45 No alias (at2g43650 : 99.0) EMBRYO DEFECTIVE 2777 (EMB2777);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007146 Sas10/Utp3/C1D 30 110
No external refs found!