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GRMZM5G895175


Description : splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein


Gene families : OG_42_0005903 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM5G895175
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G031400 No alias splicing factor PWI domain-containing protein / RNA... 0.05 Orthogroups_2024-Update
Potri.008G147100 No alias splicing factor PWI domain-containing protein / RNA... 0.04 Orthogroups_2024-Update
Potri.010G094700 No alias splicing factor PWI domain-containing protein / RNA... 0.04 Orthogroups_2024-Update
Sobic.007G126600.4 No alias pre-mRNA splicing factor *(RBM25) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
BP GO:0006397 mRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002483 PWI_dom 669 733
IPR000504 RRM_dom 78 147
No external refs found!