GRMZM5G897976


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM5G897976
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At3g18600 No alias DEAD-box ATP-dependent RNA helicase 51... 0.06 Orthogroups_2024-Update
At5g54910 No alias DEAD-box ATP-dependent RNA helicase 32... 0.06 Orthogroups_2024-Update
Brara.E00183.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02336.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.05 Orthogroups_2024-Update
Brara.F02458.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Brara.J00951.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.04G145400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Glyma.06G209400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
HORVU1Hr1G004510.5 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00020_0660 kfl00020_0660_v1.... (at2g40700 : 447.0) P-loop containing nucleoside... 0.01 Orthogroups_2024-Update
Kfl00630_0030 kfl00630_0030_v1.... (at3g18600 : 568.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
PSME_00013759-RA No alias (at3g18600 : 554.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
Potri.001G250700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Potri.001G423300 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.009G045300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Pp1s358_58V6 No alias atp-dependent rna helicase 0.02 Orthogroups_2024-Update
Pp1s59_317V6 No alias rna helicase 0.04 Orthogroups_2024-Update
Seita.2G332500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G051500.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.06 Orthogroups_2024-Update
Sobic.002G318800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc03g114370 No alias RNA helicase DEAD13 0.05 Orthogroups_2024-Update
Solyc07g064520 No alias RNA helicase DEAD24 0.03 Orthogroups_2024-Update
Sopen03g033470 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update
Sopen07g021900 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
Sopen07g032720 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update
evm.model.tig00000441.11 No alias (at3g18600 : 300.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00000441.12 No alias (at5g65900 : 171.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update
evm.model.tig00020604.24 No alias (at5g54910 : 437.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 392 498
IPR025313 DUF4217 541 600
IPR011545 DEAD/DEAH_box_helicase_dom 176 346
No external refs found!